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Encyclopedia > DNA binding protein

DNA-binding proteins are a broad class of protein molecules that possess certain structural motifs (i.e. helices) which enable them to stably bind both double- or single-stranded DNA. Examples of such proteins would be those whose primary function is to regulate the expression of specific genes (termed transcription factors), those proteins involved in the packaging of DNA within the nucleus (histones), nucleic acid dependent-polymerases involved in DNA replication and the transcription of mRNA, or any of many accessory proteins which are involved in these processes.


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Protein-DNA interactions (0 words)
The procedure is the same, except that the protein is incubated with the DNA for a period of time to allow binding.
For instance, Cro binds tightly to oR3 and weakly to oR1 and oR2; CI binds tightly (and cooperatively) to oR1 and oR2, weakly to oR3.
Result: DNA molecules to which proteins bind move more slowly in the gel and are retarded relative to the sample with no protein.
Maintaining protein stability through buffers, freezing, and lyophilization (1112 words)
Typically, proteins are stored freeze-dried (lyophilized), frozen in appropriate buffers, or refrigerated at 4°C. For short-term storage of proteins (hours to days), a standard laboratory refrigerator at 4°C is satisfactory providing the buffer used to solvate the protein provides all the necessary components necessary to stabilize the protein of interest.
Proteins can be stored long term (days to weeks) by quick-freezing the sample followed by storage at -20°C. Addition of stabilizers such as glycerol helps prevent damage to the protein during freezing and thawing.
After the protein solution is frozen, it is attached to a lyophilizer where the frozen solution sublimes leaving the protein behind, usually as a fluffy white powder.
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