In 1946, he became a full professor at Berkeley, and in 1954 he was appointed associate director of the Lawrence Radiation Laboratory, being promoted to director in 1958, where he stayed until his retirement in 1973.
McMillan also made a major advance in the development of Ernest Lawrence's cyclotron, which in the early 1940s had run up against its theoretical limit.
McMillan returned to the University of California Radiation Laboratory as Associate Director from 1954-1958, when he was raised to Deputy Director and finally Director, in the same year.
Professor McMillan is a Fellow of the American Physical Society and the American Academy of Arts and Sciences, a member of the National Academy of Sciences and the American Philosophical Society, and from 1954-1958 he served on the General Advisory Committee to the Atomic Energy Commission.